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ARROW-1541: [C++] Fix race conditions in arrow_gpu with generated Flatbuffers files. Do not put generated files in source tree

It's a better practice to put generated files in the build directory rather than in the main source tree. There was also a race condition with `arrow/gpu/cuda_version.h`, so fixed that also

Author: Wes McKinney <wes.mckinney@twosigma.com>

Closes #1180 from wesm/ARROW-1541 and squashes the following commits:

1e95ecae [Wes McKinney] Put generated Flatbuffers sources in the binary dir rather than source dir. Fix race conditions in arrow_gpu build