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ARROW-15199: [Java] Update protobuf-maven-plugin to avoid 'Text file busy' failure

Occasionally, we see this in CI: `An error occurred while invoking protoc. Error while executing process. Cannot run program "/arrow/java/flight/flight-core/target/protoc-plugins/protoc-3.17.3-linux-x86_64.exe": error=26, Text file busy`

This appears to be due to a JDK bug: https://github.com/xolstice/protobuf-maven-plugin/issues/34

A workaround was added to recent versions of the Protobuf plugin, but we aren't using the newest version consistently. This PR updates the versions to use 0.6.1 everywhere.

Closes #12040 from lidavidm/arrow-15199

Authored-by: David Li <li.davidm96@gmail.com>
Signed-off-by: David Li <li.davidm96@gmail.com>