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GH-43437: [Java] Update protobuf from 3.25.1 to 3.25.4 (#43436)

### Rationale for this change

Update Java protobuf minor version. 3.25.4 includes the `Automatic-Module-Name`. 

### What changes are included in this PR?

* Update java protobuf to 3.25.4 

### Are these changes tested?

CI

### Are there any user-facing changes?

No.
* GitHub Issue: #43437

Authored-by: Dane Pitkin <dpitkin@apache.org>
Signed-off-by: David Li <li.davidm96@gmail.com>